Hey there,
I am looking for a Genome Browser that is able to visualize my Helicos sequencing data (BAM-files) on the Arabidopsis transcriptome (TAIR10) and additionally having the possibility to export the number of reads aligned to each gene into a text or excel file.
Up till now I tried Integrated genome browser and Integrative genomics viewer. But they do not seem to have this feature.
If somebody knows a good one pls tell me
I am looking for a Genome Browser that is able to visualize my Helicos sequencing data (BAM-files) on the Arabidopsis transcriptome (TAIR10) and additionally having the possibility to export the number of reads aligned to each gene into a text or excel file.
Up till now I tried Integrated genome browser and Integrative genomics viewer. But they do not seem to have this feature.
If somebody knows a good one pls tell me
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