Are you checking both the read and its mate are mapped?
P.S. From a style point of view it is more common to do "if statement:" and "if not statement:" rather than "if statement==True:" and "if statement=False:"
P.P.S. I think you mean "inversions" not "eversions". Places where the sequence has (somehow) been inverted (turned round).
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How to find eversions with Pysam code?
I would like to write code to find eversion.
To find inversion, the code for this if statement is as follows:
elif read.is_reverse == read.mate_is_reverse:
But I cannot figure out what the code is for finding eversion.
Does somebode know this code?
I tried:
elif read.is_reverse == True and read.mate_is_reverse == False:
and
elif read.is_reverse == False and read.mate_is_reverse == True:
But both won't work. How can that be?
Can somebody help me?Tags: None
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