Deleterious information in dbSNP

[genelab]

Hello everyone,
How could I obtain the SNPs which are deleterious in the dbSNP?

Is the recent versions of dbSNP containing the deleterious information if the SNP sites is deleterious?


Thanks a lot!

[ymc]

ftp://[email protected]

SNPs with alternate allele shorter than the reference allele are deletions

[genelab]

ftp://[email protected]

SNPs with alternate allele shorter than the reference allele are deletions

thanks for you reply~

my purpose is to obtain the deleterious snp sits.

Any body knows ?


Many thanks~

[ymc]

thanks for you reply~

my purpose is to obtain the deleterious snp sits.

Any body knows ?


Many thanks~

snp position is also in the vcf file

[shyam_la]

Based on my understanding of your question, do this:

Go to: http://www.ncbi.nlm.nih.gov/snp/limits

Choose organism and then under annotation, check "clinical/lsdb submissions" and also choose "pathogenic" and "probably pathogenic". Hit Search.

You can download it in a format you want using "display settings" on left top.