Align long sequences to genome reference

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Amative

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Join Date: Dec 2011

Posts: 45
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#1

Align long sequences to genome reference

07-14-2012, 09:47 AM

Hello All,

Anyone can guide me to a good tool to align a file of genes (up to 15K bp) to a genome and can produce SAM formatted output file.

Thank you,
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gaffa

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Join Date: Oct 2010

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#2

07-16-2012, 09:30 AM

BWASW (part of the bwa program) works fine for this task.
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Amative

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Join Date: Dec 2011

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#3

07-17-2012, 06:05 AM

Thanks gaffa, I'll give it a try , hope it works
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