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  • Amative
    Member
    • Dec 2011
    • 45
    #1

    Align long sequences to genome reference

    Hello All,

    Anyone can guide me to a good tool to align a file of genes (up to 15K bp) to a genome and can produce SAM formatted output file.

    Thank you,
    Tags: None
  • gaffa
    Member
    • Oct 2010
    • 82
    #2
    BWASW (part of the bwa program) works fine for this task.

    Comment

    • Amative
      Member
      • Dec 2011
      • 45
      #3
      Thanks gaffa, I'll give it a try , hope it works

      Comment

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