CASAVA library problem

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m_elena_bioinfo

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Join Date: Oct 2009

Posts: 99
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#1

CASAVA library problem

07-24-2012, 11:11 PM

Dear,
the installation of CASAVA1.8 with cmake is not trivial for me!
I download the tar file, and tried to install all by cmake. But I have a problem in define library @CASAVA_FULL_PERL_LIBDIR@ and @CASAVA_FULL_DATADIR@ in perl scripts. In the scripts, it say "# substituted by CMake during install"...but when I run configureBcltoFastq.pl it returns me some errors like:

@CASAVA_FULL_DATADIR@/makefiles/ not found...

Any advice?
Thanx a lot
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seb567

Senior Member

Join Date: Jul 2008

Posts: 260
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#2

07-25-2012, 04:35 AM

Originally posted by m_elena_bioinfo View Post

Dear,
the installation of CASAVA1.8 with cmake is not trivial for me!
I download the tar file, and tried to install all by cmake. But I have a problem in define library @CASAVA_FULL_PERL_LIBDIR@ and @CASAVA_FULL_DATADIR@ in perl scripts. In the scripts, it say "# substituted by CMake during install"...but when I run configureBcltoFastq.pl it returns me some errors like:

@CASAVA_FULL_DATADIR@/makefiles/ not found...

Any advice?
Thanx a lot

Based on CASAVA_v1.8.2/src/INSTALL:

$ tar -jxf CASAVA_v1.8.2.tar.bz2
$ mkdir CASAVA_v1.8.2-build
$ cd CASAVA_v1.8.2-build
$ ../CASAVA_v1.8.2/configure --prefix=/software/CASAVA/1.8.2
$ make
$ make install

This will install it to /software/CASAVA/1.8.2

I think you are not supposed to use CMake yourself to build CASAVA, it is probably something internal to its build system.

Good luck.
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