SRA tool-kits fastq-dump warning

leshin

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Join Date: Jul 2012

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SRA tool-kits fastq-dump warning

07-26-2012, 12:39 PM

Hi,

I am a IT supporting staff within a bioinformatics research center. Currently, I am installing the SRA-Toolkits on our HPC system (intel cpu with RHEL 5). I successfully compile and install this toolkits without any problem. But when I try to do some testing with fastq-dump command, I got "fastq-dump.2.1.17 warn: path not found while loading dynamic library within file system module - could not build srapath manager" error message. However, the input .sra file can still successfully convert into a fastq output file. I try to find the possible solution for this warning message without any fortune. I am not a biologist or bioinformatician, so I wonder can someone help me with that? Thanks a lot.

Best

Le-Shin
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arielgis

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Join Date: Aug 2012

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#2

08-06-2012, 01:52 AM

I share the same problem

Hi Leshin
I share the same problem and still haven't found the answer
If you have already solved this issue please post it here.

Thanks!!

Ariel
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SRA tool-kits fastq-dump warning

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