SRA tool-kits fastq-dump warning

[leshin]

Hi,

I am a IT supporting staff within a bioinformatics research center. Currently, I am installing the SRA-Toolkits on our HPC system (intel cpu with RHEL 5). I successfully compile and install this toolkits without any problem. But when I try to do some testing with fastq-dump command, I got "fastq-dump.2.1.17 warn: path not found while loading dynamic library within file system module - could not build srapath manager" error message. However, the input .sra file can still successfully convert into a fastq output file. I try to find the possible solution for this warning message without any fortune. I am not a biologist or bioinformatician, so I wonder can someone help me with that? Thanks a lot.

Best

Le-Shin

[arielgis]

I share the same problem

Hi Leshin
I share the same problem and still haven't found the answer
If you have already solved this issue please post it here.

Thanks!!

Ariel