is anyone who have used MuSiC in WashU?

[dkrtndhkd]

Hello, I'm first in using MuSiC tool and got a problem.

when I calculate bmr, I used calc-bmr option and put parameters as the synopsis of website says.

however, I got this error messege;

ERROR: Can't call method "bit_test" on an undefined value at /usr/share/perl5/Genome/Model/Tools/Music/Bmr/CalcBmr.pm line 599, <GEN7> line 5.

please let me know what's the problem.

Or, is there another tool to get a bmr value?

[cyriac]

You need to ensure that the MAF, reference fasta, BAM files, and ROI file, all use the same chromosome naming conventions. If you use the chr-prefix in the BAMs and Fasta, the MAF and ROI files should use the same.

[dkrtndhkd]

thank you