Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • lj907
    Junior Member
    • Jul 2012
    • 9

    #1

    Scripture.jar needing missing files!!

    Hi,
    I have been posting some questions about scripture.. I now seem to be getting it to run, until it stops looking for some files which are missing, does anyone know what these are and where I can get them from to solve the problem.. this is command line:

    $ java -jar /Users/xxxxx/Downloads/scripture-beta.jar -alignment /Users/xxxxx/Downloads/GSE20851_GSM521650_ES.aligned.sam -out chr19.scriptureESTest.segments -sizeFile /Users/xxxxx/Downloads/mm9.sizes.txt -chr chr19 -chrSequence /Users/xxxxx/Downloads/chr19.fa.txt
    Using Version VPaperR3
    Has pairs: false
    Has upweighting turned on: false
    Computing weights..... upweighting? false weight: 1.0
    AlignmentDataModel loaded, initializing model stats
    Computing alignment global stats for chromosome chr19
    Couldn't find file: /images/dragNdrop.png
    Couldn't find file: /images/zoomin.gif
    Couldn't find file: /toolbarButtonGraphics/general/ZoomIn24.gif
    Couldn't find file: /toolbarButtonGraphics/general/ZoomOut24.gif
    Couldn't find file: /images/slider.png
    Couldn't find file: /images/dsliderbottom.png
    Couldn't find file: /images/dslidertop.png
    Couldn't find file: /images/dsliderbar.png
    Couldn't find file: /images/zoom-plus.png
    Couldn't find file: /images/zoom-minus.png
    Couldn't find file: /images/cursor-openhand-dot.png
    Couldn't find file: /images/cursor-fist.png
    Couldn't find file: /images/regionTool.png
    Couldn't find file: /toolbarButtonGraphics/general/Refresh24.gif
    Couldn't find file: /toolbarButtonGraphics/navigation/Home24.gif


    Cheers
    LJ907

Latest Articles

Collapse

  • kinpict.com
    Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
    by kinpict.com
    The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
    Today, 06:37 PM
  • SEQadmin2
    16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
    by SEQadmin2





    NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
    10-30-2026, 06:46 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by SEQadmin2, 11-12-2026, 07:59 AM
0 responses
27 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 11-05-2026, 09:25 AM
0 responses
35 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 11-03-2026, 11:54 AM
2 responses
56 views
0 reactions
Last Post kinpict.com  
Started by SEQadmin2, 10-28-2026, 09:57 AM
0 responses
175 views
0 reactions
Last Post SEQadmin2  
Working...