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  • rathankar
    started a topic doubt in mapping

    doubt in mapping

    i did a mapping study using BOWTIE and TOPHAT for a sample read file:
    1. The mapped statistics says:
    number of genes in the mapping using bowtie: 47
    number of repeat regions in the mapping using bowtie: 12
    number of CDS regions in the mapping using bowtie: 42

    while,
    number of genes in the mapping using TOPHAT: 22
    number of repeat regions in the mapping using TOPHAT: 6
    number of CDS regions in the mapping using TOPHAT: 21

    Why is this so. is there any relationship between these quantatities. i know that we use TOPHAT for mapping RNA-Seq data, but i did this for unmapped reads

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  • seqadmin
    Multiomics Techniques Advancing Disease Research
    by seqadmin


    New and advanced multiomics tools and technologies have opened new avenues of research and markedly enhanced various disciplines such as disease research and precision medicine1. The practice of merging diverse data from various ‘omes increasingly provides a more holistic understanding of biological systems. As Maddison Masaeli, Co-Founder and CEO at Deepcell, aptly noted, “You can't explain biology in its complex form with one modality.”

    A major leap in the field has
    ...
    02-08-2024, 06:33 AM

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