I'm a guy who involved in Bio-informatics.
Theses days, we have a lot of intesests in genome sequencing
and consider some mapping programs, especially MAQ & BWA.
We are trying to run MAQ & BWA in parallel way,
having a some questions.
1. How to divide & distribute the data?
We have two possible options for this.
- divide the reads.
- divide the reference. (1 chromosome per machine)
For example, ABi Corona recommends us to divide the genome.
What is the option MAQ & BWA recommend?
2. Does MAQ processs color-space data efficiently?
We cannnot find any text about how to process CS data with MAQ.
Could you give us some tutorial about processing CS data?
We are looking forward to your valuable advice.
Theses days, we have a lot of intesests in genome sequencing
and consider some mapping programs, especially MAQ & BWA.
We are trying to run MAQ & BWA in parallel way,
having a some questions.
1. How to divide & distribute the data?
We have two possible options for this.
- divide the reads.
- divide the reference. (1 chromosome per machine)
For example, ABi Corona recommends us to divide the genome.
What is the option MAQ & BWA recommend?
2. Does MAQ processs color-space data efficiently?
We cannnot find any text about how to process CS data with MAQ.
Could you give us some tutorial about processing CS data?
We are looking forward to your valuable advice.
Comment