Recently, I am trying to run cuffdiff by importing the SAM files generated by Novoalign. I got many error messages on the console as the following,
BAM record error: found spliced alignment without XS attribute
And then all output files are empty. I read the cufflink manual and found it is caused by the custom tag XS. I don't know how to solve this issue. How can I suppress it or remove it?
Any response would be greatly appreciated!
BAM record error: found spliced alignment without XS attribute
And then all output files are empty. I read the cufflink manual and found it is caused by the custom tag XS. I don't know how to solve this issue. How can I suppress it or remove it?
Any response would be greatly appreciated!
