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  • SOAPsnp install problems

    I tried to use SOAPsnp to call SNPs for RNA-seq data. When I used "make all" to install the SOAPsnp, it come out such words:

    g++ -fomit-frame-pointer -O3 -ffast-math -funroll-loops -mmmx -msse -msse2 -msse3 -fmessage-length=0 -c -o call_genotype.o call_genotype.cc
    In file included from call_genotype.cc:1:
    soap_snp.h:12:51: error: boost/iostreams/filtering_streambuf.hpp: No such file or directory
    soap_snp.h:13:36: error: boost/iostreams/copy.hpp: No such file or directory
    soap_snp.h:14:43: error: boost/iostreams/filter/gzip.hpp: No such file or directory
    make: *** [call_genotype.o] Error 1

    I think it maybe have something wrong with the "boost", however I can not find an effective way to fix it,.Can anybody help me to install SOAPsnp? Thank you

  • #2
    I'm not sure whether you have solved your problem, in case you haven't, here's what I did:

    Code:
    wget http://sourceforge.net/projects/boost/files/boost/1.51.0/boost_1_51_0.tar.gz/download
    tar zxvf boost_1_51_0.tar.gz
    export CPLUS_INCLUDE_PATH="absolute_path_to_boost/boost_1_51_0"
    then go to SOAPsnp directory and do 'make all' again. Basically, I just added the boost library pool to the default lib searching path.

    Comment


    • #3
      Install the boost-devel package will solve your problem better

      In Fedora,
      sudo yum install boost-devel

      In Ubuntu
      sudo apt-get install libboost1.48-dev

      I was searching answers of this question and met this

      Comment


      • #4
        Originally posted by qtl View Post
        In Fedora,
        sudo yum install boost-devel

        In Ubuntu
        sudo apt-get install libboost1.48-dev

        I was searching answers of this question and met this


        This works, thanks.

        Comment

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