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  • honey
    Senior Member
    • Feb 2010
    • 151

    #1

    Single cell RNAseq _ Transcriptome sequence

    I have data which has ben generated from Single cells (Stem cells/ cancer cells), I was wondering if some one has work flow for such anlaysis or any open source tools if some one has tested the tool.

    Thanks
  • honey
    Senior Member
    • Feb 2010
    • 151

    #2
    single cell RNA seq

    Any suggestion or experience to share on this?

    Comment

    • Avazeh
      Junior Member
      • Jul 2012
      • 7

      #3
      Use Galaxy:
      Galaxy: Open source platform for accessible, reproducible, and transparent computational research


      There are easy video tutorials for beginners, also nice document and support too!

      Have fun

      Comment

      • honey
        Senior Member
        • Feb 2010
        • 151

        #4
        Single cell RNA-seq

        I use Galaxy a lot, Could you please specify which tool you are referring to for Single cell RNA-seq. Am I missing something?

        Comment

        • Avazeh
          Junior Member
          • Jul 2012
          • 7

          #5
          This might be helpful:
          Galaxy is a community-driven web-based analysis platform for life science research.


          Could you be more specific? What kind of analysis you like to do?

          Comment

          • NextGenSeq
            Senior Member
            • Apr 2009
            • 482

            #6
            How did you make the single cell RNA-Seq library? We have problems going below 20 cells.

            Comment

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