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  • Testtube
    Junior Member
    • Aug 2012
    • 2

    #1

    Pymol/VMD - Switch to atomic level

    Hello,

    I'm trying to figure out the structure of a protein. So I installed the programs Pymol and VMD which can show the 3D-structure of proteins using a pdb-file.

    I have the sequence of a protein and would like to check where a certain amino acid is exactly located at in the structure.

    Does anyone know how to use those programs?

    Thank you very much!

    Greetings,
    Testtube
  • AsoBioInfo
    Member
    • Dec 2011
    • 37

    #2
    When you open the protein in PyMol, sequence can be make visible by clicking the "S" button at the bottom - right. Select the amino acid in the sequence and it will be highlighted in the Structure.

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