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  • ABySS for paired reads?

    Does anyone know whether or not a version of the ABySS software will be released in the future that can handle paired short reads?

    I am trying to do a de novo short read assembly but the input data files are huge and Velvet software is not parallelisable. Thanks.

  • #2
    Hi lindseyjane,

    Abyss supports paired reads. The README file included with the source includes instructions on how to assemble paired-end data. If you need more help you can post questions to the abyss-users mailing list (http://www.bcgsc.ca/mailman/listinfo/abyss-users)

    Hope that helps,
    Jared

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    • #3
      Thank you

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