Pick a representative transcript

[shanebrubaker]

Hi, I would like a program to pick a representative subset of transcripts from different a set of multiple time point transcriptome assemblies. So in other words, I don't want the same transcript repeated, but I do want to capture variants of that transcript.

Does anyone know of a good piece of software for doing this?

Thanks,
Shane

[Wallysb01]

Would CD-HIT be able to do what you're going for here?

[shanebrubaker]

That looks interesting, I will try it. Thanks!