Hi all,
What is the best way in terms of time/sensitivity to search for reads from the different parts of the same genome or combined genomes? Specifically, for the short reads and big BAM files.
I know that BWA-SW looks for such reads but it requires long reads. It seems there are plenty of such tools for the RNAseq data. Could you advise the most effective way for the DNAseq paired-end data? Does anybody use chimerascan tool for such purposes?
Thanks!
What is the best way in terms of time/sensitivity to search for reads from the different parts of the same genome or combined genomes? Specifically, for the short reads and big BAM files.
I know that BWA-SW looks for such reads but it requires long reads. It seems there are plenty of such tools for the RNAseq data. Could you advise the most effective way for the DNAseq paired-end data? Does anybody use chimerascan tool for such purposes?
Thanks!
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