Originally posted by dpryan
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I did something similar and it is able to produce bam files now.
Although kind of disappointed that i cannot use the tview option
/usr/local/samtools-0.1.18/samtools tview test.bam
[bam_index_load] fail to load BAM index.
[bam_index_load] fail to load BAM index.
$ /usr/local/samtools-0.1.18/samtools index test.bam
[bam_index_core] the alignment is not sorted (all-hg18_9815): 2498970
> 2498636 in 1-th chr
[bam_index_build2] fail to index the BAM file.
[bam_index_core] the alignment is not sorted (all-hg18_9815): 2498970
> 2498636 in 1-th chr
[bam_index_build2] fail to index the BAM file.
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