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  • adaptivegenome
    Super Moderator
    • Nov 2009
    • 436

    #1

    whole genome trios

    Aside from the two trios in the 1KG project, are there other whole genome trios that are publicly available.

    If there other datasets such as exome trios, I would be interested as well.

    Thanks for any advice...
  • vivek_
    PhD Student
    • Jul 2012
    • 164

    #2
    Complete genomics datasets has a couple:

    The 69 genome data set includes:

    A Yoruban trio
    A Puerto Rican trio
    A 17-member CEPH pedigree across three generations
    A diversity panel representing unrelated individuals from nine different populations
    http://www.completegenomics.com/public-data/69-Genomes/

    Edit: I'm not very sure if these are different from the 1KG project though.

    Comment

    • adaptivegenome
      Super Moderator
      • Nov 2009
      • 436

      #3
      Originally posted by vivek_ View Post
      Complete genomics datasets has a couple:



      http://www.completegenomics.com/public-data/69-Genomes/

      Edit: I'm not very sure if these are different from the 1KG project though.
      I appreciate it. In this particular case I am looking for non-complete genomics data.

      I guess I am hoping for Illumina data. It is fine if they are 1KG samples, and frankly I would be interested in any available genome data, not just trios. And to be clear, I am aware of the 1000G dataset. I am simply looking for new data that sequences these samples as well as other using 100bp reads and lots of depth.

      Thanks for any input!

      Comment

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