Does anyone ever heard of anything that can convert bast output into sam or bam file? I'm doing all these analysis but I'm to lazy to figure out how to get the data from blast file that will match scores extracted from sam files
-
-
There is a blast2sam.pl script in samtools. I never tested it. (misc directory) -
See also https://www.biostars.org/p/53434/ which has another suggestion: https://github.com/guyduche/Blast2Bam
As an aside, the NCBI seem to be working on native SAM output in BLAST+ itself:
Comment
-
CRISPR/Cas9 sparked the gene editing revolution for both research and therapeutics.1 But this system still showed severe issues that limited its applications. The most prominent were the heavy reliance on PAM sequences, delivery limitations, double-stranded breaks that prompt unintended edits and cell death, and editing inefficiency (both in targeting and in knock-in reliability).
Despite this, “CRISPR helped turn genome editing from a specialized technique into...07-31-2026, 11:01 AM
Comment