After finishing BWA alignment, the result displays a strange phenomenon. That is a read whose flag showed it is unmapped read however ending with specific aligned information(map quality, map length etc.).
Is it a bug in BWA? How can I figure it out without any error information when processing BWA? Anybody encountered the same case?
Is it a bug in BWA? How can I figure it out without any error information when processing BWA? Anybody encountered the same case?
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