I,
I want to use repeatModeler:
I have created my database witout error, but when I launch the RepeatModeler script, I have this error in the output file :
nohup: ignoring input
RepeatModeler Version open-1.0.5
================================
Search Engine = ncbi
Database = PM ..
- Sequences = 12940
- Bases = 93195127
Using temporary directory = /home/chris/ReapeatModeler/PM/RM_15527.TueOct161418482012
RepeatModeler Round # 1
========================
Searching for Repeats
-- Sampling from the database...
BeGINNING...
- Gathering up to 40000000 bp
RepeatModeler::sampleFromDB() Could not obtain sequence ncbi ( entry = 1-0-5, start = 1 end = 46138 ) from the database!
Have you an idea?
Thanks by advance
Chris
I want to use repeatModeler:
I have created my database witout error, but when I launch the RepeatModeler script, I have this error in the output file :
nohup: ignoring input
RepeatModeler Version open-1.0.5
================================
Search Engine = ncbi
Database = PM ..
- Sequences = 12940
- Bases = 93195127
Using temporary directory = /home/chris/ReapeatModeler/PM/RM_15527.TueOct161418482012
RepeatModeler Round # 1
========================
Searching for Repeats
-- Sampling from the database...
BeGINNING...
- Gathering up to 40000000 bp
RepeatModeler::sampleFromDB() Could not obtain sequence ncbi ( entry = 1-0-5, start = 1 end = 46138 ) from the database!
Have you an idea?
Thanks by advance
Chris
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