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  • clarissaboschi
    Member
    • Apr 2010
    • 63
    #1

    SOAPindel x SOAP-popIndel

    Hi I am trying to call small Indels from NGS data (Illumina) with the tool SOAPindel (http://soap.genomics.org.cn/soapindel.html). I have pooled samples.

    This is the best option or can I use the SOAP-popIndel?? Which one is the best and what are the differences?

    Also I am just wondering if somebody have used the SOAPindel and which command line and options used. Any suggestion?
    I saw that I need to run the fasta file for each chromosome separately. Can I run for all chromosomes together?

    Thanks
    Clarissa
    Tags: soapindel; soap-popindel
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