Tophat --resume error

[lpulagam]

Hi All,

My tophat 2.0.5 run failed with the follwing error:

terminate called after throwing an instance of 'std::bad_alloc'
  what():  std::bad_alloc

When i tried to resume it using the "tophat --resume th-v2 (Note: th-v2 is the output directory)
stopped with the following error

Traceback (most recent call last):
  File "/home/appl/seq/bin/tophat", line 4035, in ?
    sys.exit(main())
  File "/home/appl/seq/bin/tophat", line 3797, in main
    newargv=doResume(params.resume_dir)
  File "/home/appl/seq/bin/tophat", line 212, in doResume
    thcmd = next(flog)
NameError: global name 'next' is not defined

Thank you so much for your suggestions.

[aoler]

I had this same problem. As it turns out, the "next" function was introduced in Python 2.6, so if you update your Python to at least 2.6, it should work. I was using 2.4.3 (on Linux) when I had the error, but when I tried with Python 2.7, it worked fine. Hopefully that works for you as well.

[lpulagam]

I am working with python version 2.6, but still getting the same problem.
I should try python 2.7.
thanks