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  • #16
    Originally posted by amitbik View Post
    Hi sunhh,

    I have some problem in ltr_finder i am using this command

    ltr_finder -w 0 -s trna.fa -a ./ps_scan/ uni.fa > uni_ltr.txt

    it run arround 16 hours and the two file uni.fa.ltrf and uni.fa.ltrf.err is empty. It also showed an error cannot find resonable bandwith: continue anyway.

    Can you tell me why this error came and the two files are empty?

    Thank you...
    How large is your input file? I would recommend running the command on a small subset rather than trying to get the program working on a full genome. That error is very strange and makes me think that something went wrong with your local machine or network rather than LTR_Finder.

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    • #17
      Originally posted by SES View Post
      How large is your input file? I would recommend running the command on a small subset rather than trying to get the program working on a full genome. That error is very strange and makes me think that something went wrong with your local machine or network rather than LTR_Finder.
      Thanks for your response SES

      My input file is 318 mb. I ll tried as you said this time i took 1000 seq. i gave command

      ltr_finder -w 0 -s trna.fa -a ./ps_scan/ t.fa > t.txt

      No output file is created but in the t.txt file the result came like this for all the sequence

      Predict protein Domains 0.180 second
      >Sequence: CONTIG6613 Len:1479
      No LTR Retrotransposons Found
      Last edited by amitbik; 02-11-2014, 04:35 AM.

      Comment


      • #18
        Can any one reply me why i am getting error like this?? plz reply me guys..

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