Originally posted by amitbik
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Originally posted by SES View PostHow large is your input file? I would recommend running the command on a small subset rather than trying to get the program working on a full genome. That error is very strange and makes me think that something went wrong with your local machine or network rather than LTR_Finder.SES
My input file is 318 mb. I ll tried as you said this time i took 1000 seq. i gave command
ltr_finder -w 0 -s trna.fa -a ./ps_scan/ t.fa > t.txt
No output file is created but in the t.txt file the result came like this for all the sequence
Predict protein Domains 0.180 second
>Sequence: CONTIG6613 Len:1479
No LTR Retrotransposons FoundLast edited by amitbik; 02-11-2014, 04:35 AM.
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