Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • #16
    Originally posted by amitbik View Post
    Hi sunhh,

    I have some problem in ltr_finder i am using this command

    ltr_finder -w 0 -s trna.fa -a ./ps_scan/ uni.fa > uni_ltr.txt

    it run arround 16 hours and the two file uni.fa.ltrf and uni.fa.ltrf.err is empty. It also showed an error cannot find resonable bandwith: continue anyway.

    Can you tell me why this error came and the two files are empty?

    Thank you...
    How large is your input file? I would recommend running the command on a small subset rather than trying to get the program working on a full genome. That error is very strange and makes me think that something went wrong with your local machine or network rather than LTR_Finder.

    Comment


    • #17
      Originally posted by SES View Post
      How large is your input file? I would recommend running the command on a small subset rather than trying to get the program working on a full genome. That error is very strange and makes me think that something went wrong with your local machine or network rather than LTR_Finder.
      Thanks for your response SES

      My input file is 318 mb. I ll tried as you said this time i took 1000 seq. i gave command

      ltr_finder -w 0 -s trna.fa -a ./ps_scan/ t.fa > t.txt

      No output file is created but in the t.txt file the result came like this for all the sequence

      Predict protein Domains 0.180 second
      >Sequence: CONTIG6613 Len:1479
      No LTR Retrotransposons Found
      Last edited by amitbik; 02-11-2014, 04:35 AM.

      Comment


      • #18
        Can any one reply me why i am getting error like this?? plz reply me guys..

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Best Practices for Single-Cell Sequencing Analysis
          by seqadmin



          While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
          06-06-2024, 07:15 AM
        • seqadmin
          Latest Developments in Precision Medicine
          by seqadmin



          Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

          Somatic Genomics
          “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
          05-24-2024, 01:16 PM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, 06-17-2024, 06:54 AM
        0 responses
        11 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 06-14-2024, 07:24 AM
        0 responses
        24 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 06-13-2024, 08:58 AM
        0 responses
        17 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 06-12-2024, 02:20 PM
        0 responses
        20 views
        0 likes
        Last Post seqadmin  
        Working...
        X