[SES]

Hi sunhh,

I have some problem in ltr_finder i am using this command

ltr_finder -w 0 -s trna.fa -a ./ps_scan/ uni.fa > uni_ltr.txt

it run arround 16 hours and the two file uni.fa.ltrf and uni.fa.ltrf.err is empty. It also showed an error cannot find resonable bandwith: continue anyway.

Can you tell me why this error came and the two files are empty?

Thank you...

How large is your input file? I would recommend running the command on a small subset rather than trying to get the program working on a full genome. That error is very strange and makes me think that something went wrong with your local machine or network rather than LTR_Finder.

[amitbik]

How large is your input file? I would recommend running the command on a small subset rather than trying to get the program working on a full genome. That error is very strange and makes me think that something went wrong with your local machine or network rather than LTR_Finder.

Thanks for your response SES

My input file is 318 mb. I ll tried as you said this time i took 1000 seq. i gave command

ltr_finder -w 0 -s trna.fa -a ./ps_scan/ t.fa > t.txt

No output file is created but in the t.txt file the result came like this for all the sequence

Predict protein Domains 0.180 second
>Sequence: CONTIG6613 Len:1479
No LTR Retrotransposons Found

[amitbik]

Can any one reply me why i am getting error like this?? plz reply me guys..