what does tophat '--coverage-search'

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splaisan

senior molecular biologist

Join Date: Jun 2009

Posts: 32
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what does tophat '--coverage-search'

10-29-2012, 04:33 AM

I tried to figure out what the consequences are in using --coverage-search vs --no-coverage-search.
Tophat warns me each run that with --no-coverage-search it will go faster but nowhere did I find explanations on what the tradeoff will be using it.

Thanks for your lights.

Last edited by splaisan; 10-29-2012, 04:34 AM. Reason: typo

http://www.bits.vib.be/index.php
Tags: tophat

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