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Hello,
I am beguining to build a database with all our SNPs and indels from NGS and micrarrays. Here are our current need :
- the variants will be annoted (gerp, sift, polyphen...)
- they will be linked to other database (1000 genomes, dbsnp)
- This database will have, for each variant, the position called for all the sample.
- New sample, all the position already present in the database will be called for this sample
- New sample, new position will be called for all the samples
Only for SNPs, this currently represent more than 1 billion of records.
Have you aready done that?
Are you going or are you currently building such a database?
If like me, you know what a database is but you ar enot a database geek, we could share knowledge.
tdm
I am beguining to build a database with all our SNPs and indels from NGS and micrarrays. Here are our current need :
- the variants will be annoted (gerp, sift, polyphen...)
- they will be linked to other database (1000 genomes, dbsnp)
- This database will have, for each variant, the position called for all the sample.
- New sample, all the position already present in the database will be called for this sample
- New sample, new position will be called for all the samples
Only for SNPs, this currently represent more than 1 billion of records.
Have you aready done that?
Are you going or are you currently building such a database?
If like me, you know what a database is but you ar enot a database geek, we could share knowledge.
tdm