Hi!
Is there a way to directly run htseq-count on a bam file? I know that htseq supports bam input via HTSeq.BAM_Reader(), but is there a flag to tell the htseq-count script that I'm using a bam?
Or which file in the source code (and how) do I modify to configure it to work with bams and not sams???
Thanks in advance!
Is there a way to directly run htseq-count on a bam file? I know that htseq supports bam input via HTSeq.BAM_Reader(), but is there a flag to tell the htseq-count script that I'm using a bam?
Or which file in the source code (and how) do I modify to configure it to work with bams and not sams???
Thanks in advance!
Comment