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  • upendra_35
    Senior Member
    • Apr 2010
    • 102

    #1

    USEARCH chimera removal memory error

    Hi

    I was trying to detect chimera removal command from USEARCH program and i have encountered memory related error. Does anybody have an idea of what it is.......and how to fix it?

    usearch6.0.307_i86linux32 -uchime_ref transcripts.fa -db ref.fa -uchimeout results.uchime -strand plus

    ---Fatal error--- Out of memory, mymalloc(696115460), curr 3.16e+09 bytes

    Thanks Upendra
  • maasha
    Senior Member
    • Apr 2009
    • 153

    #2
    Pay lots of $$$ for the 64 bit version of USEARCH or split the input and reference data sets.

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