Hello,
when I use picard 1.46, I got an error. it seems picard uses Snappy class.
can anyone tell me how to solve the problem?
thanks
Yu
Exception in thread "main" java.lang.NoClassDefFoundError: org/xerial/snappy/SnappyError
at net.sf.samtools.util.TempStreamFactory.getSnappyLoader(TempStreamFactory.java:43)
at net.sf.samtools.util.TempStreamFactory.wrapTempOutputStream(TempStreamFactory.java:74)
at net.sf.samtools.util.SortingCollection.spillToDisk(SortingCollection.java:207)
at net.sf.samtools.util.SortingCollection.add(SortingCollection.java:150)
at net.sf.samtools.SAMFileWriterImpl.addAlignment(SAMFileWriterImpl.java:157)
at
when I use picard 1.46, I got an error. it seems picard uses Snappy class.
can anyone tell me how to solve the problem?
thanks
Yu
Exception in thread "main" java.lang.NoClassDefFoundError: org/xerial/snappy/SnappyError
at net.sf.samtools.util.TempStreamFactory.getSnappyLoader(TempStreamFactory.java:43)
at net.sf.samtools.util.TempStreamFactory.wrapTempOutputStream(TempStreamFactory.java:74)
at net.sf.samtools.util.SortingCollection.spillToDisk(SortingCollection.java:207)
at net.sf.samtools.util.SortingCollection.add(SortingCollection.java:150)
at net.sf.samtools.SAMFileWriterImpl.addAlignment(SAMFileWriterImpl.java:157)
at