Creates BAMBUS .mates file problem asking

edge

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Join Date: Sep 2009

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Creates BAMBUS .mates file problem asking

09-30-2009, 01:13 AM

Refer the latest version of BAMBUS, which I read at the following manual:

AMOS

http://sourceforge.net/apps/mediawiki/amos/index.php?title=Bambus_Manual#Getting_more_.28or_less.29_information_from_the_output

Download AMOS for free. AMOS is a collection of tools for genome assembly. AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.

At the section of creates .mates file, I needed to key in the following info:

library <name> <min_size> <max_size> <regexp>

And the example given is showed as:
library small 2000 4000 (....).*
pair (.*)\.x1$ (.*)\.y1$

Can I know what all those small, 2000, 4000,etc refer to?
Where I can get all this figure?

Thanks a lot for your advise.
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