Regarding the paper "Instructions for scaffolding MIRA 454 contigs & 25 KB paired-end data with BAMBUS"
Can I know how to fill in the figure or contents below?
I got read the "configuration file help" at
"http://sourceforge.net/apps/mediawiki/amos/index.php?title=Bambus_Manual#Getting_more_.28or_less.29_information_from_the_output"
But still feel very confusing how to fill in the contents below:
# Priorities
priority ALL 1
# The following lines can be un-commented to specify certain
# per-library settings
# Redundancies
# redundancy lib_some 1
# allowed error
# error MUMmer 0.5
# min group size
mingroupsize 50000
# Global redundancy
redundancy 2
# overlaps allowed
# overlaps MUMmer Y
Anybody know what is the main purpose we "setup BAMBUS configuration file"?
Normally when we "setup BAMBUS configuration file", which data or file we should referred to?
Can I find it at the *_info_assembly.txt file?
Thanks a lot for all of your advice and suggestion
Can I know how to fill in the figure or contents below?
I got read the "configuration file help" at
"http://sourceforge.net/apps/mediawiki/amos/index.php?title=Bambus_Manual#Getting_more_.28or_less.29_information_from_the_output"
But still feel very confusing how to fill in the contents below:
# Priorities
priority ALL 1
# The following lines can be un-commented to specify certain
# per-library settings
# Redundancies
# redundancy lib_some 1
# allowed error
# error MUMmer 0.5
# min group size
mingroupsize 50000
# Global redundancy
redundancy 2
# overlaps allowed
# overlaps MUMmer Y
Anybody know what is the main purpose we "setup BAMBUS configuration file"?
Normally when we "setup BAMBUS configuration file", which data or file we should referred to?
Can I find it at the *_info_assembly.txt file?
Thanks a lot for all of your advice and suggestion
