Control Freec error

[tahamasoodi]

Hi,

I'm getting the following error while running control freec:

Unable to open fasta file for chr Vې���,�7+�+o�����i���C-]HϧV@A���Z�r�A��h!�O�'XAX���'�������<M�٤���*F���|FX{�?�AI������h���a��[���x2�NM���G��3�cR��A�������Ҋ�� in folder /home/taha/Softwares/Human-Genome/hg19_chrs/humangenome19

Please note, /home/taha/Softwares/Human-Genome/hg19_chrs/humangenome19 should be a folder, not a file!


The input file i use is:

[general]
chrLenFile = hs19_1C.len
window = 3000
step = 1000
ploidy = 2
#breakPointThreshold = -.001
intercept=1
minMappabilityPerWindow = 0.7
outputDir = /media/Disk-2/Freec
sex=XY
breakPointType=4
#degree=3
#coefficientOfVariation = 0.05
gemMappabilityFile = /home/taha/Softwares/Gem/hg19/out76_hg19.gem
chrFiles = /home/taha/Softwares/Human-Genome/hg19_chrs/humangenome19/

[sample]

mateCopyNumberFile = /home/taha/Softwares/samtools-0.1.18/505C.sorted.bam
inputFormat = bam
mateOrientation = FR

[control]

mateCopyNumberFile = /home/taha/Softwares/samtools-0.1.18/505N.sorted.bam
inputFormat = bam
mateOrientation = FR

[BAF]

SNPfile = snp132.txt
minimalCoveragePerPosition = 5

[Target]

captureRegions = TargetSeq_exome_target_regions_hg19.bed

Can anybody help?