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  • Fad2012
    Member
    • Sep 2012
    • 62

    #1

    How to install NCBI BLAST 2.2.27+ on mac OS X 10.8.1

    Dear all,

    I am trying to install the latest BLAST+ 2.2.27+ following the instruction on the following page which is provided from NCBI :



    However, i am now completely lost, as they mention on the page that:

    To do BLAST searches on platforms lacking precompiled blast+ package will require compiling the BLAST source code. The source code file, "ncbi-blast-#.#.#+-src" in either zip or gziped tar format, is available from the same ftp directory as blast+ packages. Questions and feedbacks on source code compilation should be addressed to: [email protected].

    This is the first time for me to deal with local BLAST, and i know that my system is lacking the precompiled blast+. I want to know how to compile the BLAST+ and then configure the BLAST. When i try to configure it as it is mentioned on the page above, all the time i receive error messages such as: No such file or directory, or command not found.

    ANY SUGGESTIONS OR HELP PLEASE!

    Thanks very much.
  • maubp
    Peter (Biopython etc)
    • Jul 2009
    • 1544

    #2
    Unless you have a strong reason to do so, don't bother compiling BLAST+ yourself - just use the pre-compiled binaries from the NCBI. They work fine and it is far easier - just decompress the tar-ball, and move/copy the binaries to somewhere on your path:
    ftp://ftp.ncbi.nlm.nih.gov/blast/exe...blast+/LATEST/

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