Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Hiroki
    replied
    Hi zinky,

    Thanks for the suggestion. I installed fastx-toolkit.
    Although I needed to fix some script for some reason, it is running at least on CLI.
    Thank you so much

    Leave a comment:


  • zinky
    replied
    I hava no idea on what's your problem is ,but i can give you a alter way to plot this kind of graph. as far as i know , Galaxy adopt fastx-tools to perform such analysis,you may try this softerware to draw the plot step by step .also you must install some package it depends which are listed clearly on http://hannonlab.cshl.edu/fastx_toolkit/download.html.
    hope it works for you

    Leave a comment:


  • Hiroki
    started a topic Boxplot on Galaxy: gnuplot error?

    Boxplot on Galaxy: gnuplot error?

    Hi,
    I am running a local Galaxy server on Mac. I tried to draw a boxplot from summary statistics created from groomed fastq data.

    Then I got error message as follows:
    An error occurred running this job: gnuplot> set term png size 2048,768 ^ line 0: unknown or ambiguous terminal type; type just 'set terminal' for a list
    line 0: warning: Too many axis ticks requested (>1e+02) Error running gnuplot.

    I believe gnuplot was appropriately installed using MacPorts (confrimed it starts when I type "gnuplot" on terminal). I also installed libpng by Macports and now "png" is listed when I type "set terminal" in gnuplot for a list.

    How can I help it???

Latest Articles

Collapse

  • seqadmin
    Best Practices for Single-Cell Sequencing Analysis
    by seqadmin



    While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
    06-06-2024, 07:15 AM
  • seqadmin
    Latest Developments in Precision Medicine
    by seqadmin



    Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

    Somatic Genomics
    “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
    05-24-2024, 01:16 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Today, 08:58 AM
0 responses
8 views
0 likes
Last Post seqadmin  
Started by seqadmin, Yesterday, 02:20 PM
0 responses
14 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-07-2024, 06:58 AM
0 responses
181 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-06-2024, 08:18 AM
0 responses
230 views
0 likes
Last Post seqadmin  
Working...
X