Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • Hiroki
    Member
    • May 2010
    • 17

    #1

    Boxplot on Galaxy: gnuplot error?

    Hi,
    I am running a local Galaxy server on Mac. I tried to draw a boxplot from summary statistics created from groomed fastq data.

    Then I got error message as follows:
    An error occurred running this job: gnuplot> set term png size 2048,768 ^ line 0: unknown or ambiguous terminal type; type just 'set terminal' for a list
    line 0: warning: Too many axis ticks requested (>1e+02) Error running gnuplot.

    I believe gnuplot was appropriately installed using MacPorts (confrimed it starts when I type "gnuplot" on terminal). I also installed libpng by Macports and now "png" is listed when I type "set terminal" in gnuplot for a list.

    How can I help it???
  • zinky
    Member
    • Dec 2011
    • 48

    #2
    I hava no idea on what's your problem is ,but i can give you a alter way to plot this kind of graph. as far as i know , Galaxy adopt fastx-tools to perform such analysis,you may try this softerware to draw the plot step by step .also you must install some package it depends which are listed clearly on http://hannonlab.cshl.edu/fastx_toolkit/download.html.
    hope it works for you

    Comment

    • Hiroki
      Member
      • May 2010
      • 17

      #3
      Hi zinky,

      Thanks for the suggestion. I installed fastx-toolkit.
      Although I needed to fix some script for some reason, it is running at least on CLI.
      Thank you so much

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
        by SEQadmin2




        NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...
        10-30-2026, 06:46 AM
      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 10-28-2026, 09:57 AM
      0 responses
      44 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-28-2026, 09:51 AM
      0 responses
      26 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 11:13 AM
      0 responses
      74 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 10:48 AM
      0 responses
      48 views
      0 reactions
      Last Post SEQadmin2  
      Working...