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  • Boxplot on Galaxy: gnuplot error?

    Hi,
    I am running a local Galaxy server on Mac. I tried to draw a boxplot from summary statistics created from groomed fastq data.

    Then I got error message as follows:
    An error occurred running this job: gnuplot> set term png size 2048,768 ^ line 0: unknown or ambiguous terminal type; type just 'set terminal' for a list
    line 0: warning: Too many axis ticks requested (>1e+02) Error running gnuplot.

    I believe gnuplot was appropriately installed using MacPorts (confrimed it starts when I type "gnuplot" on terminal). I also installed libpng by Macports and now "png" is listed when I type "set terminal" in gnuplot for a list.

    How can I help it???

  • #2
    I hava no idea on what's your problem is ,but i can give you a alter way to plot this kind of graph. as far as i know , Galaxy adopt fastx-tools to perform such analysis,you may try this softerware to draw the plot step by step .also you must install some package it depends which are listed clearly on http://hannonlab.cshl.edu/fastx_toolkit/download.html.
    hope it works for you

    Comment


    • #3
      Hi zinky,

      Thanks for the suggestion. I installed fastx-toolkit.
      Although I needed to fix some script for some reason, it is running at least on CLI.
      Thank you so much

      Comment

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