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Xinlitik

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Join Date: Nov 2012

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Getting isoform info from cuffdiff output

12-10-2012, 10:24 PM

Cuffdiff found a gene of interest with several isoforms differentially expressed. Is there a way that I can see the sequence of each isoform, or better yet, which exons are used? The only difference I can find is the TCONS ID for each one, but that is an internal ID, right?

Thank you
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