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  • enelkinsan
    Member
    • May 2012
    • 14
    #1

    IGV reading .bam

    Hi all,
    I'm trying to open .bam file in IGV but I keep getting "sorted.bam does not contain any sequence names which match the current genome" error.
    I'm slightly puzzled were to look, because I've imported the same genome I used as a reference for bwa and get .bai file for .bam in the same directory as .bam. What am I missing?

    Thanks!!
    Tags: igv
  • enelkinsan
    Member
    • May 2012
    • 14
    #2
    Update: the problem sort of resolved by using Tablet instead of IGV

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