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  • greener
    Member
    • Sep 2010
    • 17
    #1

    generation of GTF file from a gbff?

    Howdy folks, quick question .I recently pulled down some cyno genome data that included a fasta, asn, and gbff file. I create an index with bowtie2 from the fasta and ran it with no problems. I would like a GTF file to run additional tools (tophat, cufflinks, etc.) . I have already tried the tool gb2gtf.py someone wrote and it did not work. Any advice or suggestions folks have is muchly appreciated.
    Thanks
    -Rich
    Tags: None
    • mashbaugh
      Junior Member
      • Oct 2014
      • 4
      #2
      I have the same question. Did you ever find a way to make this work?

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