Bambus

[coldturkey]

I have a bambus related question if some one has the time to answer it.

I am trying to use bambus to generate scaffolds from my 454 mate -pairs (3kb library) but always get the same amount of scaffolds as contigs. I assume that this is a problem with my mates file but have no idea how to fix it.

Library threeKB 700 3000 (..............).*
pair (.*)\.f (.*)\.r

all values are separated by tabs. read naming scheme is correct XXXXXXXXXXXXXX.f/r where X is some letter/number

bambus version is 2.33.

Thanks in advance

Brian

[bio-x]

I have a bambus related question if some one has the time to answer it.

I am trying to use bambus to generate scaffolds from my 454 mate -pairs (3kb library) but always get the same amount of scaffolds as contigs. I assume that this is a problem with my mates file but have no idea how to fix it.

Library threeKB 700 3000 (..............).*
pair (.*)\.f (.*)\.r

all values are separated by tabs. read naming scheme is correct XXXXXXXXXXXXXX.f/r where X is some letter/number

bambus version is 2.33.

Thanks in advance

Brian

change Library to library.
good luck!

[coldturkey]

thanks. Very much appreciated