I have a bambus related question if some one has the time to answer it.
I am trying to use bambus to generate scaffolds from my 454 mate -pairs (3kb library) but always get the same amount of scaffolds as contigs. I assume that this is a problem with my mates file but have no idea how to fix it.
Library threeKB 700 3000 (..............).*
pair (.*)\.f (.*)\.r
all values are separated by tabs. read naming scheme is correct XXXXXXXXXXXXXX.f/r where X is some letter/number
bambus version is 2.33.
Thanks in advance
Brian
I am trying to use bambus to generate scaffolds from my 454 mate -pairs (3kb library) but always get the same amount of scaffolds as contigs. I assume that this is a problem with my mates file but have no idea how to fix it.
Library threeKB 700 3000 (..............).*
pair (.*)\.f (.*)\.r
all values are separated by tabs. read naming scheme is correct XXXXXXXXXXXXXX.f/r where X is some letter/number
bambus version is 2.33.
Thanks in advance
Brian
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