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  • Amative
    Member
    • Dec 2011
    • 45
    #1

    predict transcription factor binding sites in dna sequence

    Hello all,

    Can anyone here guide me to webtools or regular tools for predicting transcription factor binding sites in dna sequence. I know TESS (Transcription Element Search System) website. But looking for others!

    Thank you!
    Tags: None
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142
    #2
    Here is a small list: http://molbiol-tools.ca/Transcriptional_factors.htm

    There are commercial options (e.g. Transfac) but I assume you are interested in free tools.

    Comment

    • Amative
      Member
      • Dec 2011
      • 45
      #3
      Thanks GenoMax, you are right, I was looking for free stuff!
      Although a couple of those listed at the link are for searching binding factors database NOT predicting. Please let me know if you come across any new tools.
      BTW, I was able to find this
      http://alggen.lsi.upc.es/cgi-bin/promo_v3/promo/promoinit.cgi?dirDB=TF_8.3


      Regards

      Comment

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