merge annotations from annnovar

[luoruicd]

Hi All,
I am using annovar to annotate a large list of SNPs for all gene based, region based and field based. I wish to create a large table that merge all the results. Is there an easy way to do it?

[luoruicd]

A relevant question is can we do multiple annotation at the same time with annovar? Say within region-based annotation, we do "Most conserved element annotation" and "Transcription factor binding site annotation" etc together?

[yl01]

SUMMARIZE_ANNOVAR can do it. See it on the annovar homepage.