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  • aquleaf
    Member
    • Mar 2010
    • 38

    #1

    Does Tophat remove duplicates

    Hi all.

    May I ask a question about Tophat? Does Tophat remove duplicates? Duplicates here mean the reads were mapped to the same genomic region, say, for single end sequencing, the leftmost of these reads are mapped to the same place.

    Thanks very much! Your help will be much appreciated.

    Best
  • chadn737
    Senior Member
    • Jan 2009
    • 392

    #2
    No, it doesn't

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