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  • desmo
    Member
    • Nov 2011
    • 25

    #1

    Available tumor-normal dataset with result (CNV, Snp and Indels)

    Hi everyone.
    I'm working on cancer genomes analisys and I would like to test the result of my pipeline.
    Do you know where I can find some available dataset (something like NCBI sra) that have information about found CNV, Snp and Indels.
  • LI Jia
    Junior Member
    • Dec 2012
    • 5

    #2
    You can go to the resource bundle of GATK to download Snp data called "dbsnp_137.hg19.vcf".
    ftp://ftp.broadinstitute.org/bundle/2.3/hg19/

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