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Hi All,
I am brand new to R (and am completely self taught, perhaps not very well either) and trying to learn how to use edgeR to analyze my RNA sequencing data. I have gotten all the way through the command sets until I reach the following and I get this error;
>detags <-rownames(y)[as.logical(de)]
> plotSmear(lrt,de.tags=detags)
Error in quantile.default(M, c(0.05, 0.95)) :
missing values and NaN's not allowed if 'na.rm' is FALSE
I noticed that in my workspace, the detags value is listed as unknown [0], which I assume is a part of the problem but I have no idea how to fix it, or why it comes up like that.
Any help anyone can offer would be so greatly appreciated!
Cheers!
I am brand new to R (and am completely self taught, perhaps not very well either) and trying to learn how to use edgeR to analyze my RNA sequencing data. I have gotten all the way through the command sets until I reach the following and I get this error;
>detags <-rownames(y)[as.logical(de)]
> plotSmear(lrt,de.tags=detags)
Error in quantile.default(M, c(0.05, 0.95)) :
missing values and NaN's not allowed if 'na.rm' is FALSE
I noticed that in my workspace, the detags value is listed as unknown [0], which I assume is a part of the problem but I have no idea how to fix it, or why it comes up like that.
Any help anyone can offer would be so greatly appreciated!
Cheers!
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