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Difference between Multiple hits and Chimeric hits

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  • Difference between Multiple hits and Chimeric hits

    what is the difference between chimeric hits and multiple hits? Does chimeric hits affects the SNP detection in further downstream analysis? If the answer is positive then can any1 suggest me the software for removing the chiemeric hits???

  • #2
    Originally posted by Maulik23 View Post
    what is the difference between chimeric hits and multiple hits? Does chimeric hits affects the SNP detection in further downstream analysis? If the answer is positive then can any1 suggest me the software for removing the chiemeric hits???
    Multiple hits: a read that maps to more than one location

    Chimeric hits: a read that maps partially at two locations or more (the "SplitRead" method)

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