what is the difference between chimeric hits and multiple hits? Does chimeric hits affects the SNP detection in further downstream analysis? If the answer is positive then can any1 suggest me the software for removing the chiemeric hits???
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Multiple hits: a read that maps to more than one locationOriginally posted by Maulik23 View Post
Chimeric hits: a read that maps partially at two locations or more (the "SplitRead" method)
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