Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • #16
    Originally posted by Farhat View Post
    Is there a program to convert a Fasta file to an Ace assembly file? While googling I came across references to fasta2ace.pl but no program itself.

    Thanks.
    Hi farhat,

    I wanna know ,how to extract contig file ,I am running velvet algorithm , i got .afg format, that i have viewed in hawkeye .,and i wanna extract specific contig .can you help me on that, ??? it would be wonder if i get the positive reply from you

    thanks

    Comment


    • #17
      Originally posted by Torst View Post
      Can you be a bit more precise on what you require?
      A FASTA file is just a bunch of sequences with an ID and a description.
      What form do you want the ACE file to take?
      Hi torst,


      I am having the doubt in denovo assembly, shall i ask?

      Comment


      • #18
        Originally posted by sundar View Post
        Hi farhat,
        I wanna know ,how to extract contig file ,I am running velvet algorithm , i got .afg format, that i have viewed in hawkeye .,and i wanna extract specific contig .can you help me on that, ??? it would be wonder if i get the positive reply from you
        thanks
        Velvet produces a file called "contigs.fa" with all the contigs. Just cut+paste the contig you want out of that file.

        Comment


        • #19
          need to view the extract conig file

          Hi all, i can extract the best contig file by using a perl program .but i wanna view the extracted contig file.


          Need help

          Comment


          • #20
            Originally posted by sundar View Post
            Hi all, i can extract the best contig file by using a perl program .but i wanna view the extracted contig file.
            Please clarify. What do you mean by "view" ? Just open it with a text editor?

            Comment

            Latest Articles

            Collapse

            • seqadmin
              Latest Developments in Precision Medicine
              by seqadmin



              Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

              Somatic Genomics
              “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
              Today, 01:16 PM
            • seqadmin
              Recent Advances in Sequencing Analysis Tools
              by seqadmin


              The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
              05-06-2024, 07:48 AM

            ad_right_rmr

            Collapse

            News

            Collapse

            Topics Statistics Last Post
            Started by seqadmin, Today, 07:15 AM
            0 responses
            10 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, Yesterday, 10:28 AM
            0 responses
            15 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, Yesterday, 07:35 AM
            0 responses
            16 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 05-22-2024, 02:06 PM
            0 responses
            8 views
            0 likes
            Last Post seqadmin  
            Working...
            X