[sundar]

Is there a program to convert a Fasta file to an Ace assembly file? While googling I came across references to fasta2ace.pl but no program itself.

Thanks.

Hi farhat,

I wanna know ,how to extract contig file ,I am running velvet algorithm , i got .afg format, that i have viewed in hawkeye .,and i wanna extract specific contig .can you help me on that, ??? it would be wonder if i get the positive reply from you

thanks

[sundar]

Can you be a bit more precise on what you require?
A FASTA file is just a bunch of sequences with an ID and a description.
What form do you want the ACE file to take?

Hi torst,


I am having the doubt in denovo assembly, shall i ask?

[Torst]

Hi farhat,
I wanna know ,how to extract contig file ,I am running velvet algorithm , i got .afg format, that i have viewed in hawkeye .,and i wanna extract specific contig .can you help me on that, ??? it would be wonder if i get the positive reply from you
thanks

Velvet produces a file called "contigs.fa" with all the contigs. Just cut+paste the contig you want out of that file.

[sundar]

need to view the extract conig file

Hi all, i can extract the best contig file by using a perl program .but i wanna view the extracted contig file.


Need help

[Torst]

Hi all, i can extract the best contig file by using a perl program .but i wanna view the extracted contig file.

Please clarify. What do you mean by "view" ? Just open it with a text editor?