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  • #16
    Originally posted by Farhat View Post
    Is there a program to convert a Fasta file to an Ace assembly file? While googling I came across references to fasta2ace.pl but no program itself.

    Thanks.
    Hi farhat,

    I wanna know ,how to extract contig file ,I am running velvet algorithm , i got .afg format, that i have viewed in hawkeye .,and i wanna extract specific contig .can you help me on that, ??? it would be wonder if i get the positive reply from you

    thanks

    Comment


    • #17
      Originally posted by Torst View Post
      Can you be a bit more precise on what you require?
      A FASTA file is just a bunch of sequences with an ID and a description.
      What form do you want the ACE file to take?
      Hi torst,


      I am having the doubt in denovo assembly, shall i ask?

      Comment


      • #18
        Originally posted by sundar View Post
        Hi farhat,
        I wanna know ,how to extract contig file ,I am running velvet algorithm , i got .afg format, that i have viewed in hawkeye .,and i wanna extract specific contig .can you help me on that, ??? it would be wonder if i get the positive reply from you
        thanks
        Velvet produces a file called "contigs.fa" with all the contigs. Just cut+paste the contig you want out of that file.

        Comment


        • #19
          need to view the extract conig file

          Hi all, i can extract the best contig file by using a perl program .but i wanna view the extracted contig file.


          Need help

          Comment


          • #20
            Originally posted by sundar View Post
            Hi all, i can extract the best contig file by using a perl program .but i wanna view the extracted contig file.
            Please clarify. What do you mean by "view" ? Just open it with a text editor?

            Comment

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